I have extensive knowledge of Duke 3D, Doom and Quake and can't think of you can get a lesser experience with them using a controller. I played both ways substantially.
Doom 2016 for example is so much better with a mouse despite being designed for controllers as well. I pulled off the wildest shit, so good. Which is physically impossible to do with a controller.
Everyone plays differently though and it's all about having fun, we're just busting each others balls here for the lulz.
I have fun actually hitting things and playing well. While you have fun playing Basketball while being in a wheelchair. To each their own!